4 #ifndef SIMSSPECIMAGE_HPP
5 #define SIMSSPECIMAGE_HPP
31 void buildImage(
int SF,
int K0,
int nwin,
int npp, uint32_t *x, uint32_t *y, uint32_t *scans,
32 uint32_t *tofs,
size_t len, uint32_t xBin, uint32_t yBin, uint32_t zBin, uint32_t tofsBin,
size_t mem,
33 uint32_t *ulimits,
size_t len_limits,
int lim_t,
void *files);
73 SIMSpecImage(
const std::string& tofs,
const std::string& coords =
"",
74 const std::string& scans =
"",
const std::string& props =
"",
75 int SF = 0,
int K0 = 0,
int nwin = 66,
int npp = 0,
76 uint32_t xBin = 1, uint32_t yBin = 1, uint32_t zBin = 1,
77 uint32_t tofsBin = 1,
size_t mem = 0);
119 SIMSpecImage(std::vector<uint32_t>& limits,
const std::string& tofs,
const std::string& coords =
"",
120 const std::string& scans =
"",
const std::string& props =
"",
121 int SF = 0,
int K0 = 0,
int nwin = 66,
int npp = 0,
122 uint32_t xBin = 1, uint32_t yBin = 1, uint32_t zBin = 1,
123 uint32_t tofsBin = 1,
size_t mem = 0);
166 SIMSpecImage(std::vector<FPType>& limits,
const std::string& tofs,
const std::string& coords =
"",
167 const std::string& scans =
"",
const std::string& props =
"",
168 int SF = 0,
int K0 = 0,
int nwin = 66,
int npp = 0,
169 uint32_t xBin = 1, uint32_t yBin = 1, uint32_t zBin = 1,
170 uint32_t tofsBin = 1,
size_t mem = 0);
175 SIMSpecImage(
int SF,
int K0,
int nwin,
int npp, uint32_t *x, uint32_t *y, uint32_t *scans,
176 uint32_t *tofs,
size_t len, uint32_t xBin, uint32_t yBin, uint32_t zBin, uint32_t tofsBin,
size_t mem,
177 uint32_t *limits,
size_t len_limits);
182 SIMSpecImage(
int SF,
int K0,
int nwin,
int npp, uint32_t *x, uint32_t *y, uint32_t *scans,
183 uint32_t *tofs,
size_t len, uint32_t xBin, uint32_t yBin, uint32_t zBin, uint32_t tofsBin,
size_t mem,
184 FPType *limits,
size_t len_limits);
251 void scaleMatrix(
const std::vector<FPType>& g,
const std::vector<FPType>& h);
276 void setLimits(
const std::vector<uint32_t>& limits);
void advancedDeadTimeCorrection()
Advanced dead-time correction preprocessing.
int getSF()
Return the SIMS calibration parameter SF.
Base class representing a spectral image.
Definition: SpecImage.hpp:496
Overall namespace for the NAG C++ Hyperspectral Imaging Library.
Definition: MALDISpecImage.hpp:12
void scaleMatrix()
Scale the image matrix.
int getK0()
Return the SIMS calibration parameter K0.
Class representing a spectral image generated from a Secondary Ion Mass Spectrometry instrument...
Definition: SIMSpecImage.hpp:25
SIMSpecImage(const std::string &tofs, const std::string &coords="", const std::string &scans="", const std::string &props="", int SF=0, int K0=0, int nwin=66, int npp=0, uint32_t xBin=1, uint32_t yBin=1, uint32_t zBin=1, uint32_t tofsBin=1, size_t mem=0)
Constructor: construct by passing filenames directly without peak selection limits.
void setLimits(const std::vector< uint32_t > &limits)
Set the limits to use during nag::SpecImage::peakSelect.